Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-13 Thread Douglas N Greve
Sorry, I was going through "old" emails and did not see this had already been addressed. Please ignore, which I'm sure most of you were doing anyway :-) On 05/13/2014 01:37 PM, Douglas N Greve wrote: > This is a very vague request. What kind of connectivity analysis? fMRI > or DTI? What softwar

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-13 Thread Douglas N Greve
This is a very vague request. What kind of connectivity analysis? fMRI or DTI? What software are you using? On 05/08/2014 05:43 AM, Jutta Ernst wrote: > > > Dear Freesurfer's > > I draw a roi to extract the cortical thickness for my two groups and > that worked fine. > Now I'm trying to export

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Jutta Ernst
Thank you, that solved it :-)cheers > Am 08.05.2014 um 15:56 schrieb Bruce Fischl : > > then you probably want to use mri_label2vol to sample it into the volume. > If the output name has the extension .nii it will be in nifti format > > cheers > Bruce > > > >> On Thu, 8 May 2014, Jutta Ernst

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Jutta Ernst
It's a label file... On 05/08/2014 02:56 PM, Bruce Fischl wrote: > and what format is your ROI in? > On Thu, 8 May 2014, Jutta Ernst wrote: > >> Hi >> >> Nifti would be great and the software would be Data Processing Assistant for >> Resting-State fMRI (DPARSF). >> >> Cheers, Jutta >> >> >> On 05

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Bruce Fischl
then you probably want to use mri_label2vol to sample it into the volume. If the output name has the extension .nii it will be in nifti format cheers Bruce On Thu, 8 May 2014, Jutta Ernst wrote: > It's a label file... > > > On 05/08/2014 02:56 PM, Bruce Fischl wrote: >> and what format is you

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Bruce Fischl
and what format is your ROI in? On Thu, 8 May 2014, Jutta Ernst wrote: > Hi > > Nifti would be great and the software would be Data Processing Assistant for > Resting-State fMRI (DPARSF). > > Cheers, Jutta > > > On 05/08/2014 02:38 PM, Bruce Fischl wrote: > > Hi Jutta > > we need more detail

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Jutta Ernst
Hi Nifti would be great and the software would be Data Processing Assistant for Resting-State fMRI (/DPARSF/). Cheers, Jutta On 05/08/2014 02:38 PM, Bruce Fischl wrote: Hi Jutta we need more details - what format are you trying to conver the ROI to? What software are you planning to use to

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Bruce Fischl
Hi Jutta we need more details - what format are you trying to conver the ROI to? What software are you planning to use to do the connectivity analysis? cheers Bruce On Thu, 8 May 2014, Jutta Ernst wrote: > > > Dear Freesurfer's > > I draw a roi to extract the cortical thickness for my two

[Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Jutta Ernst
Dear Freesurfer's I draw a roi to extract the cortical thickness for my two groups and that worked fine. Now I'm trying to export the very same roi to use it for further connectivity analysis. Can anyone please help me and tell me how to do it? Thanks in advance!! :-) Cheers Jutta ___