Re: [Freesurfer] Fwd: Recon-all output space and .annot file registration

2019-08-07 Thread Bruce Fischl
Hi Rachel all processing is done in the subject's native space. If you want to downsample probably the easiest thing to do is map to one of the lower res fsaverage subjects (e.g. fsaverage3 or fsaverage4) using mri_surf2surf/mri_label2label and the like after running recon-all. cheers Bruce

[Freesurfer] Fwd: Recon-all output space and .annot file registration

2019-08-07 Thread Rachel S
External Email - Use Caution Hello freesurfer developers, I am trying to get the user defined segmentation for a subject generated in here (https://github.com/mattcieslak/easy_lausanne) . After recon-all, I have the pial surface with ~250k vertices. My first question is about the