Hi,
I was following the instructions here https://surfer.nmr.mgh.
harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview after being told
that the images linked earlier in this email thread were unable to add
white matter (by adding control points) because of a topological defect. I
opened the f
Hi,
I was following the instructions here
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview
after being told that the images linked earlier in this email thread were
unable to add white matter (by adding control points) because of a
topological defect. I opened the fi
Hi Nicholas
can you tell us exactly what you did. What volume did you edit? What
command did you run? That kind of thing
cheers
Bruce
On Tue, 31 Oct 2017, Nicholas Goh wrote:
Hello,
I tried to correct a topological defect as described on the wiki but it did not
produce the proper value. B
Hello,
I tried to correct a topological defect as described on the wiki but it did
not produce the proper value. Because the wiki said to use recon-edit, any
additions made were given a value of 255 and not seen as possible white
matter. Would it cause a problem if I were to use free editing and c
Hello,
I have tried fixing the image using the topical defects page. However,
because it uses recon-edit the affected area does not seem to be recognized
as white matter. Is it okay to do free editing for the same results, or is
there something else that I should try for implementation?
Thank you
I think you have an incorrectly fixed defect at that location. Follow
the instructions on fixing defects on our wiki.
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview
On 10/23/2017 09:18 AM, Nicholas Goh wrote:
> Sorry for the delay, I was hoping to get some input
I don't know what coordinates those are. Can you give indices? indices
are non-neg
On 10/16/17 12:59 PM, Nicholas Goh wrote:
An example of the aparc+aseg not covering all that it needs to can be
found around [-7, 114, 133]
On Mon, Oct 16, 2017 at 12:47 PM, Douglas Greve
mailto:gr...@nmr.mgh
An example of the aparc+aseg not covering all that it needs to can be found
around [-7, 114, 133]
On Mon, Oct 16, 2017 at 12:47 PM, Douglas Greve
wrote:
> what is the index (ie, col, row, slice) where you are seeing a problem?
>
> On 10/16/17 11:44 AM, Nicholas Goh wrote:
>
> Hi,
>
> I am not su
what is the index (ie, col, row, slice) where you are seeing a problem?
On 10/16/17 11:44 AM, Nicholas Goh wrote:
Hi,
I am not sure if this email got lost in the process or is still
awaiting approval, but I was asked to tar and gzip the images that I
was having no luck with fixing the white
