Re: [Freesurfer] Fwd: --sum option in mri_segstats

2013-08-15 Thread Douglas N Greve
The --etiv-only option only prints it to the screen and does not create a summary file. The ICV is present in the aseg.stats file and should be present when you run asegstats2table. If you want to get the single ICV number in a file, you can run mri_segstats --subject $(filename) --etiv-only |

[Freesurfer] Fwd: --sum option in mri_segstats

2013-08-15 Thread charles laidi
Dear Freesurfers, I have a problem using the "mri_segstats" function. I'm trying to get Intra cranial volumes (ICV) from images that I have previously segmented. As I have lots of images, I'm using this script : " foreach filename (*_conv) mri_segstats --subject $(filename) --etiv-only --sum summ