Re: [Freesurfer] Freeview automation

2013-05-31 Thread Garikoitz Lerma-Usabiaga
Thanks! it is working perfectly, I created a command file to take several screenshots, for example: [...] -cam azimuth 90 -ss imagen6.png -cam azimuth 90 -cam Elevation 90 -ss imagen7.png -slice 127 180 127 -ss imagen8.png -slice 127 80 127 -cam Elevation 180 -ss imagen9.png -quit On Fri, May 3

Re: [Freesurfer] Freeview automation

2013-05-31 Thread Ruopeng Wang
If you use '-ss' option, freeview will save a screenshot and close itself. For example: freeview -v foo.mgz -ss foo.jpg On 05/31/2013 11:13 AM, Ender Konukoglu wrote: Sure. I couldn't find that option neither. What I did was to semi-automatize. I wrote a batch file to call freeview multiple

Re: [Freesurfer] Freeview automation

2013-05-31 Thread Garikoitz Lerma-Usabiaga
Thanks Ender, I am trying to make a command file with multiple commands too in order to have snapshots from different views. thanks for the help! Gari On Fri, May 31, 2013 at 5:13 PM, Ender Konukoglu wrote: > Sure. > > I couldn't find that option neither. > > What I did was to semi-automatize

Re: [Freesurfer] Freeview automation

2013-05-31 Thread Ender Konukoglu
Sure. I couldn't find that option neither. What I did was to semi-automatize. I wrote a batch file to call freeview multiple times with different parameters. Each time freeview pops up and I save the image/video. During this time the process in the terminal waits for me. When I shut that wind

Re: [Freesurfer] Freeview automation

2013-05-31 Thread Garikoitz Lerma-Usabiaga
Thanks! I can visualize the 3D renders of interest with different colors, but from "freeview -h" I couldn't get the following: is it possible to automatize the "File > Save movie frames" option? Thanks again! Gari On Fri, May 31, 2013 at 4:59 PM, Juan Eugenio Iglesias < igles...@nmr.mgh.harvar

Re: [Freesurfer] Freeview automation

2013-05-31 Thread Juan Eugenio Iglesias
Ender asked me to forward you this: I had to automate freeview recently. Freeview can be used via command line. For options please write freeview -h in the console / terminal. An example command that produces a surface and overlays a map on it: freeview -f lh.inflated:overlay=L.mgz -cam azimuth 1

Re: [Freesurfer] Freeview automation

2013-05-31 Thread Ruopeng Wang
There is a screenshot option -ss from the command-line. Run 'freeview -h' will show you all the available options. Ruopeng On May 31, 2013, at 6:16 AM, Garikoitz Lerma-Usabiaga wrote: > Hi list, > is it possible to automate Freeview automation from the command line? > > I want to automati

[Freesurfer] Freeview automation

2013-05-31 Thread Garikoitz Lerma-Usabiaga
Hi list, is it possible to automate Freeview automation from the command line? I want to automatically render 3D images of the hippocampus (I have a separate volume, based on hippo-subfields) and have an image for all subjects for quality checking. thanks! Gari ___