Re: [Freesurfer] Freesurfer crashing (gui) or exting with error (command line)

2025-01-23 Thread fsbuild
External Email - Use Caution  You don’t have permission to write to the default location of SUBJECTS_DIR as set in the freesurfer shell environment, i.e., /Applications/freesurfer/7.4.1/subjects.  The example subject data there is on purpose meant to be read only along with the

[Freesurfer] Freesurfer crashing (gui) or exting with error (command line)

2025-01-23 Thread Claas Philip Nähle
External Email - Use Caution I am trying to create a 3D brain model from a *.nii file (here: test.niiI), which I have copied to the subjects folder. A) Using the command line, the following error messages appear: Phils-MacBook:~ cnaehle$ recon-all -s brain -all -i /Applications