Frederick,
Freesurfer uses FSL's motion correction tool 'flirt'. FSL v3.2 is
distributed with Freesurfer, which is a bit out of date.
You can download and use the newest FSL if you like. Just set the
environment var FSL_DIR before calling Freesurfer setup, like this:
setenv FSL_DIR /whereeve
I would like to run FSL and Freesurfer on my Linux compter. I have
noticed that within Freesurfer I have a FSL directory. I have also
visited the FSL website and noticed an entire downloadable version of
FSL. I would like to be able to use my structural MPRAGE images that
I have analyzed in Fre
