Re: [Freesurfer] Freesurfer analysis on synthetic images

2008-04-26 Thread Bruce Fischl
Hi Christine, that should be fine - we do the same thing ourselves. cheers, Bruce On Wed, 23 Apr 2008, Christine Ecker wrote: Hi, We use quantitative T1/T2 mapping to generate a variety of synthetic images e.g. synthetic SPGRs/T1-weighted images. I was wondering whether Freesurfer analysis can

Re: [Freesurfer] Freesurfer analysis on synthetic images

2008-04-23 Thread Doug Greve
Hi Christine, Bruce is the best person to answer this but he may be out of email contact for a few more days. I think that it is probably ok, as long as your final images have a T1 contrast. doug Christine Ecker wrote: Hi, We use quantitative T1/T2 mapping to generate a variety of synthetic

[Freesurfer] Freesurfer analysis on synthetic images

2008-04-23 Thread Christine Ecker
Hi, We use quantitative T1/T2 mapping to generate a variety of synthetic images e.g. synthetic SPGRs/T1-weighted images. I was wondering whether Freesurfer analysis can be applied to such synthetic images and whether there is anything I need to change in the recon-all processing stream in order to