Hi Dan
that's a pretty low-contrast, severely motion-corrupted scan. We did pretty
well given the input I think. To visualize the defects you can cd into the
subject's mri dir and run:
fv -v brain.mgz wm.mgz:colormap=heat -f \
../surf/lh.orig.nofix:overlay=../surf/lh.defect_labels:overlay_th
Hi Dan
I'll take a look, but make sure that you are loading the lh.defect_labels
as a surface overlay onto the lh.orig.nofix and lh.inflated.nofix surfaces.
It is *not* a surface, but a scalar field over the surface
cheers
Bruce
On Thu, 11 May 2017, Weisholtz, Daniel S.,M.D. wrote:
Dear
Dear Bruce,
Thank you so much for your suggestions. Unfortunately, I was not able to open
lh.defect_labels in freeview. When I try, Freeview crashes. There are no rh
surfaces in the surf folder, so I presume this means the problem occurred in
the left hemisphere. I was able to view the inflat
