Re: [Freesurfer] Freesurfer Digest, Vol 102, Issue 10

2012-08-13 Thread Douglas N Greve
Hi Linda, can you send the terminal output for mri_segstats? Can you also send the summary file? doug On 08/13/2012 10:59 AM, Linda Douw wrote: > Hi Doug, > > I first parcellate fsaverage5 using ico4 (all my functional data are > morphed to fsaverage5 surface): > > mris_make_face_parcellation /fs

Re: [Freesurfer] Freesurfer Digest, Vol 102, Issue 10

2012-08-13 Thread Linda Douw
Hi Doug, I first parcellate fsaverage5 using ico4 (all my functional data are morphed to fsaverage5 surface): mris_make_face_parcellation /fsaverage5/rh.inflated $FREESURFER_HOME/lib/bem/ic4.tri rh.ico4.annot Then I extract the waveforms using mri_segstats mri_segstats --i rh.functional.nii.gz