Re: [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim

2025-03-06 Thread Lubig, Andreas
] Freesurfer 8 - ValueError: no field of name pixdim I see ‘subjid sub-AH002_ses-01_T1w.nii’ in your attached recon-all.log. I think mri_synthseg is confused about the ‘.nii’ in your subjid. Can you change it to “_nii” and try again? Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of

Re: [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim

2025-03-05 Thread Huang, Yujing
Sent: Wednesday, March 5, 2025 10:06 AM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim External Email - Use Caution Additional info: The "fslhd" info I provided you in the last email was based on the origina

Re: [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim

2025-03-05 Thread Lubig, Andreas
g, Andreas Gesendet: Mittwoch, 5. März 2025 15:51:10 An: freesurfer@nmr.mgh.harvard.edu Betreff: [Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim External Email - Use Caution Dear freesurfer team, I just tried to run recon-all on my T1 weighted images with the new freesurfer 8 ve

[Freesurfer] Freesurfer 8 - ValueError: no field of name pixdim

2025-03-05 Thread Lubig, Andreas
External Email - Use Caution Dear freesurfer team, I just tried to run recon-all on my T1 weighted images with the new freesurfer 8 version, but unfortunately the analysis stops with an error (it worked without any error using freesurfer 7). I've searched the list and no similar