Re: [Freesurfer] Freesurfer- subcortical group analysis

2021-06-01 Thread Douglas N. Greve
Not easily. You can do something in matlab, eg, aseg = MRIread('fsaverage/mri/aseg.mgz'); out = aseg; out.vol = zeros(out.volsize); ind = find(aseg.vol==17); % 17 = left hippo out.vol(ind) = YourValueForLeftHippoFromTheGLMAnalysis; % same thing for other ROIs MRIwrite(out,'sig.aseg.mgz'); Then vi

Re: [Freesurfer] Freesurfer- subcortical group analysis

2021-06-01 Thread Francisca Ferreira
External Email - Use Caution I see, thanks. Is there a way in Freesurfer to obtain a visual representation of these results- like in other modalities of group analysis? (eg. surface based) Many thanks On Tue, 1 Jun 2021 at 17:44, Douglas N. Greve wrote: > There are not results

Re: [Freesurfer] Freesurfer- subcortical group analysis

2021-06-01 Thread Douglas N. Greve
There are not results to visualize, there is just a table. There should be a sig table in the output folder On 5/28/2021 9:37 AM, Aldinhas De Freitas Ferreira, Francisca wrote: External Email - Use Caution So so sorry to bother you again - hopefully the last time... I have followed y