Hi Abbie
you might check out Matti Hamalainen's MNE software. He does both boundary
and finite element analysis. We distribute a test subject named "bert" you
can use
cheers
Bruce
On Tue, 5 Jul 2016, Abbie McNulty wrote:
Hello,
Just a couple more questions that would be great if you could
Hello,
Just a couple more questions that would be great if you could answer in
explanation form:
How do people develop finite element models from brain MRI?
How do people learn and implement the software on an example data set?
Abbie
On Tue, Jul 5, 2016 at 9:42 AM, Abbie McNulty wrote:
> Hell
Hi Abbie
you just use the recon-all script from the command line:
recon-all \
-i \
-sd \
-s \
-all
this will take 5-20 hours and at the end will create and populate a
directory tree with segmented volumes and surfaces
cheers
Bruce
On Mon, 27 Jun
2016
Essentially, once segmentation is achieved, how do you mesh the scans?
On Mon, Jun 27, 2016 at 3:41 PM, Abbie McNulty
wrote:
> Hi Bruce,
>
> I am trying to create a mesh of the MRI scans, eventually with imported
> scans, but for now just using the information available through the
> software. H
Hi Bruce,
I am trying to create a mesh of the MRI scans, eventually with imported
scans, but for now just using the information available through the
software. How do you work these voxel segmentations? I'm just very new with
the software.
Say I import an MRI scan, and I want to cortically segmen
Hi Abbie
what are you trying to create a mesh of? We supply meshes for the
gray/white interface and for the pial surface. We supply voxel
segmentations of lots of other things that you could mesh, but we don't
by default.
cheers
Bruce
On Mon, 27 Jun 2016, Abbie McNulty wrote:
> Hello,
> I am
Hello,
I am trying to segment a MRI brain in order to create a mesh of the image
into finite elements, but I am very new with Freesurfer/Freeview and am not
familiar with the tools. So far, I have only uploaded brain.mgt from the
bert file that comes with the program. If I wanted to mesh this brai
