Hi Maheen
you can look at the aseg.mgz or use the surfaces to create various
compartments with mris_fill, but sulcal CSF is pretty hard to accurately
detect with only a T1
cheers
Bruce
On Thu, 11 Feb 2016, Maheen Siddiqui wrote:
Dear FreeSurfer Users,
I have a T1 weighted MRI scan and have
Dear FreeSurfer Users,
I have a T1 weighted MRI scan and have run the recon-all command on it. For
my steps moving forward I need to have 4 layers of tissue i.e. 4
segmentation files - GM, WM, CSF and extra cerebral tissue. Which of the
outputs from recon-all will give me the segmentation? I thoug
