glad it worked out
Bruce
On Fri, 31 Jul 2009, Lena Palaniyappan wrote:
> Dear group
>
> Many thanks for all your help and encouragement.
> I avoided analyze format as suggested - Converted extensionless dicom files
> to nifti1 mode using MRICONVERT (
> http://lcni.uoregon.edu/~jolinda/MRIConvert/
Dear group
Many thanks for all your help and encouragement.
I avoided analyze format as suggested - Converted extensionless dicom files
to nifti1 mode using MRICONVERT (
http://lcni.uoregon.edu/~jolinda/MRIConvert/) and then used mri_convert to
obtain .mgz files. It worked :) !!
The MRICONVERT
1. What's your cmd line and what does it say when it fails? See
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting for more useful info you
can send.
2. Without the mat file, the geometry on them could be horribly wrong. I
would suggest loading it into tkmedit to make sure that it is oriented
pro
Hi Lena,
you definitely want to avoid analyze format, as it will remove the
direction cosine information you need for example to tell left from right
(it's probably why you have a flip).
We don't have much experience with dicom. Have you tried using -it dicom in
mri_convert to be explicit abou
--
Hello group
I am new to freesurfer. I have two problems. Please accept my apologies if
these queries are bit naïve!
Any help will be much appreciated. I am trying to autorecon1 a single image
obtained from Philips 3T as dicom output. I use MacOS X11 terminal.
1. I am not able to use mri_c
