Re: [Freesurfer] Flash nii to mgz failure

2018-09-17 Thread Bruce Fischl
Hi Kambiz sounds like something is wrong with the nifti file. Have you tried running mri_convert directly on the dicom files? cheers Bruce On Mon, 17 Sep 2018, Kambiz Tavabi wrote: External Email - Use Caution Greetings, I am having trouble converting flash volumes (nii.g

[Freesurfer] Flash nii to mgz failure

2018-09-17 Thread Kambiz Tavabi
External Email - Use Caution Greetings, I am having trouble converting flash volumes (nii.gz) to mgz type using mri_convert. I used dcm2nii to unpack original DICOM files and subsequently the command mri_convert flash5.nii.gz flash5.mgz fails with... niiRead(): bad number of dimens