Re: [Freesurfer] Filling Big Ventricles

2009-11-13 Thread Bruce Fischl
arkson" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Friday, November 13, 2009 3:09:58 PM GMT +00:00 GMT Britain, Ireland, > Portugal > Subject: Re: [Freesurfer] Filling Big Ventricles > > Hi Matt, > > are the ventricles labeled properly in the aseg? If so, then you probab

Re: [Freesurfer] Filling Big Ventricles

2009-11-13 Thread Matt Clarkson
numbers together? Many thanks Matt - Original Message - From: "Bruce Fischl" To: "Matt Clarkson" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Friday, November 13, 2009 3:09:58 PM GMT +00:00 GMT Britain, Ireland, Portugal Subject: Re: [Freesurfer] Filling Big Ventricle

Re: [Freesurfer] Filling Big Ventricles

2009-11-13 Thread Bruce Fischl
"Matt Clarkson" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Friday, November 13, 2009 2:44:03 PM GMT +00:00 GMT Britain, Ireland, > Portugal > Subject: Re: [Freesurfer] Filling Big Ventricles > > Hi Matt, > > yes, the filling procedure has evolved and is bette

Re: [Freesurfer] Filling Big Ventricles

2009-11-13 Thread Matt Clarkson
PM GMT +00:00 GMT Britain, Ireland, Portugal Subject: Re: [Freesurfer] Filling Big Ventricles Hi Matt, yes, the filling procedure has evolved and is better in current versions than previous ones. cheers, Bruce On Fri, 13 Nov 2009, Matt Clarkson wrote: > Hi Bruce, > > I agree with y

Re: [Freesurfer] Filling Big Ventricles

2009-11-13 Thread Bruce Fischl
ge - > From: "Bruce Fischl" > To: "Matt Clarkson" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Friday, November 13, 2009 2:25:16 PM GMT +00:00 GMT Britain, Ireland, > Portugal > Subject: Re: [Freesurfer] Filling Big Ventricles > > Hi Matt, > > the -b

Re: [Freesurfer] Filling Big Ventricles

2009-11-13 Thread Matt Clarkson
? Cheers Matt - Original Message - From: "Bruce Fischl" To: "Matt Clarkson" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Friday, November 13, 2009 2:25:16 PM GMT +00:00 GMT Britain, Ireland, Portugal Subject: Re: [Freesurfer] Filling Big Ventricles Hi Matt, the -bigven

Re: [Freesurfer] Filling Big Ventricles

2009-11-13 Thread Bruce Fischl
Hi Matt, the -bigventricles stuff is something I messed with for a while, but didn't get to work robustly and haven't gotten back to it. I'm not sure I understand your fix though. If the aseg properly labels the ventricles, then they should be filled in the wm.mgz, and if the aseg doesn't, then