Re: [Freesurfer] File input

2010-06-25 Thread Bruce Fischl
Hi Michele, you should be able to do: recon-all -i -s -all you could also give it the NIFTI volume. Note that you only need to give it *one* dicom slice and it will figure out the other ones that are in the series (although of course it has to be from the right series - the anatomical). Th

[Freesurfer] File input

2010-06-25 Thread Michele Placci
Hi all FreeSurfer Experts, I'm a young researcher, PhD student of the University of Padua with a degree in Mathematics. I'm trying to use FreeSurfer for analyze a 3D image MRI, DICOM format (I have NIFTI too) to calculate brain volume. I downloaded the software from your site following the instruc