e file...alas
i just changed the recon-all script to call mri_mask when it
gets the -norm2 flag...this seems to have worked.
sarah
Original message
Date: Wed, 22 Mar 2006 18:09:11 -0500
From: Daniel Goldenholz <[EMAIL PROTECTED]>
Subject: Re: [Freesurfer] Faster and Parallel
to have worked.
sarah
Original message
>Date: Wed, 22 Mar 2006 18:09:11 -0500
>From: Daniel Goldenholz <[EMAIL PROTECTED]>
>Subject: Re: [Freesurfer] Faster and Parallel recon-all
>To: "Goradia, Dhruman D" <[EMAIL PROTECTED]>
>Cc: freesurfer@nmr.mgh
kes about 30 hrs
to process 1 scan currently.
-Dhruman
-Original Message-
From: Daniel Goldenholz [mailto:[EMAIL PROTECTED]
Sent: Tuesday 21 March 2006 17:09
To: Goradia, Dhruman D
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Faster and Parallel recon-all
Dhruman
Thanks for c
. I am still
probing into this. If you can think of something that might be of help
then let me know.
-Dhruman
-Original Message-
From: Daniel Goldenholz [mailto:[EMAIL PROTECTED]
Sent: Tuesday 21 March 2006 11:25
To: Goradia, Dhruman D
Subject: Re: [Freesurfer] Faster and Parallel r
of help
then let me know.
-Dhruman
-Original Message-
From: Daniel Goldenholz [mailto:[EMAIL PROTECTED]
Sent: Tuesday 21 March 2006 11:25
To: Goradia, Dhruman D
Subject: Re: [Freesurfer] Faster and Parallel recon-all
Dhruman
That's confusing. I think you should take one line of exe
Ah. Silly me, I didn't notice the -log and -status options. Thanks Nick.
I have now included those into my super-recon script as well. Problem
solved.
(if you have seen my script already, you may need to hit RELOAD on your
browser to see the new version)
Daniel
Nick Schmansky wrote:
The
Nick
I completely agree with you.
However, I didn't want to edit recon-all itself, since it has this funny
tendency to change from time to time.
If there is a way to get those logs separated somehow, it would be a
good thing.
What about redirecting stdout to a hemisphere specific file? Will tha
The script looks good. The one thing it needs though is for the right
and left hemi steps to log to separate files, otherwise output to recon-
all.log will be interleaved, making debugging impossible.
On Thu, 2006-03-16 at 12:15 -0500, Daniel Goldenholz wrote:
> Ooops. I sent the below with the w
Ooops. I sent the below with the wrong subject tag. Here it is again:
Daniel Goldenholz wrote:
Freesurfers
I was hoping someone else would do this, but well, it seems that no
one did. So I went ahead and made this myself.
Amusingly, I don't NEED to reconstruct any brains right now, so I
don'
