You still have to “smooth” even if you choose fwhm=0 to project the data in the
fsaverage space.
So if I were you I would start with fwhm=5mm, check in the qdec console what is
the final fwhm of your data (or check the fwhm.dat in the glmdir folder), and
if you thinks it’s too high (I’d say >2
Dear FreeSurfers,
I am running a localgi analysis using mri_glmfit and mri_glmfit-sim, and it
seems the last script looked for
freesurfer/average/mult-comp-cor/fsaverage/?h/cortex/fwhm40/abs/th13/mc-z.cdf
and mc-z.csd, but there are precached data until fmhm30.
How should I proceed?
Best,
Pedro.
__
Many thanks!
> On Mar 16, 2016, at 15:18, Marie Schaer wrote:
>
>
> You still have to “smooth” even if you choose fwhm=0 to project the data in
> the fsaverage space.
>
> So if I were you I would start with fwhm=5mm, check in the qdec console what
> is the final fwhm of your data (or check
Thanks for que quick answer, Marie.
If I got right, I should either not smooth it after mri_preproc (no
mri_surf2surf) or do it with kernels < 5mm, and that should make to FMHM
fall below 30. Am I correct?
Thanks,
Pedro.
On Wed, Mar 16, 2016 at 3:03 PM, Marie Schaer wrote:
>
> Hi Pedro,
>
> So l
Hi Pedro,
So lGI is inherently very smoothed, and you don’t want to over smooth (which is
why you get this error), so I usually recommend either no smoothing (fwhm=0) or
fwhm=5mm, given that these are the options easily inputed in qdec. I’d say try
first with 5mm, and check if this work, if it
