Re: [Freesurfer] FW: YANQ follow-up

2014-08-06 Thread Douglas N Greve
sage- > > > From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer- > > > boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve > > > Sent: Friday, August 01, 2014 4:05 PM > > > To: freesurfer@nmr.mgh.harvard.edu > > > Subject: R

Re: [Freesurfer] FW: YANQ follow-up

2014-08-01 Thread Douglas N Greve
e5) >> does not recognize it. >> >> I tried --regmethod surface --hemi rh and found that it gives identical >> results whether using --xfm-invert or not ! >> >> >> >> Regards, >> >> >> >> Don >> >> >> >> D

Re: [Freesurfer] FW: YANQ follow-up

2014-08-01 Thread Bruce Fischl
un...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl > Sent: Friday, August 01, 2014 9:29 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] FW: YANQ follow-up > > Hi Don > > try mri_label2label. Also, the if you are transforming label volumes > you need to

Re: [Freesurfer] FW: YANQ follow-up

2014-08-01 Thread Bruce Fischl
Hi Don try mri_label2label. Also, the if you are transforming label volumes you need to use nearest neighbor interpolation, so include the -rt nearest switch. cheers Bruce On Fri, 1 Aug 2014, Krieger, Donald N. wrote: Hi All,   I am still in need of finding the tool sequence to generate

[Freesurfer] FW: YANQ follow-up

2014-08-01 Thread Krieger, Donald N.
Hi All, I am still in need of finding the tool sequence to generate an ASCII file containing (1) voxel RAS coordinates (2) for a specific label (3) using the original MRI coordinates rather than freesurfer coordinates. mri_convert -rl rawavg.mgz does generate a new output volume cont