Hi Ronny
you should have run
recon-all -autorecon2-wm -subjid subj007 -autorecon3
at this point you should be fine running -make all. It should retain all
your manual edits
cheers
Bruce
On Fri, 7 Jun 2013,
preci...@nmr.mgh.harvard.edu wrote:
> Thanks Doug,
> I did make some manual edits to
On 06/07/2013 02:24 PM, preci...@nmr.mgh.harvard.edu wrote:
> Thanks Doug,
> I did make some manual edits to wm.mgz and brainmask.mgz then reran the
> subject a couple times using:
> recon-all -autorecon2-wm -subjid subj007
>
> Shouldn't -autorecon2-wm run through -autorecon2 and -autorecon3?
No,
Thanks Doug,
I did make some manual edits to wm.mgz and brainmask.mgz then reran the
subject a couple times using:
recon-all -autorecon2-wm -subjid subj007
Shouldn't -autorecon2-wm run through -autorecon2 and -autorecon3?
Will running 'recon-all -make all -s subj007' do away with my manual edits?
Hi Ronny, there is a dimension mismatch which usually means that the
surfaces for that subject are out of synch, ie, it has not been run
through to the end. This often happens when a subject is run all the way
through, then edited and re-run but the re-run only runs autorecon1 and
autorecon2 b
I am having an issue when running the preprocess script in fs-fast. It
failed once and I tried something and ran the script again and it failed
the same way. The command I ran is:
preproc-sess -s subj007 -fsd bold -stc siemens -surface fsaverage lhrh
-mni305 -fwhm 5 -per-run
Below is the part whe
