Re: [Freesurfer] FA question

2012-02-03 Thread Michael Harms
HI Ed, I believe that you are referring to the RA measure of anisotropy. FA is theoretically limited to the range 0-1. FA's greater than 1 can arise when you have negative estimates of the eigenvalues, which can arise when using linear least squares estimation of the tensor. cheers, -MH On Fri,

Re: [Freesurfer] FA question

2012-02-03 Thread Ed Gronenschild
Dear Antonella, In theory, FA can be sqrt(3/2) = 1.2247449. This occurs if eigenvalues 2 and 3 are zero. You will find these high FA values (>1) mainly outside the brain. Ed On 3 Feb 2012, at 11:31, freesurfer-requ...@nmr.mgh.harvard.edu wrote: Dear all, I use dt_recon to process my DTI dat

[Freesurfer] FA question

2012-02-02 Thread Antonella Kis
Dear all, I use dt_recon to process my DTI data and get my fa.nii for the individual subjects. I wonder if the FA values can be greater that one since for all my subjects I got the FA max  value graeter than one. Is something wrong with my data or this is acceptable? I saw in  most of the paper