Yes! I got better results now! Thanks!!
On Thu, Feb 22, 2018 at 12:57 AM Kirstie Whitaker wrote:
> Hi Foucalt,
>
> I think you need to set the threshold to slightly larger than 0 otherwise
> you're taking the center of mass of the whole image (including the 0s) when
> really you want to exclude
Hi Foucalt,
I think you need to set the threshold to slightly larger than 0 otherwise
you're taking the center of mass of the whole image (including the 0s) when
really you want to exclude the 0s and only look at the individual regions.
I changed --thmin 0 to --thmin 0.1 and the results looked g
Attach name file and result file.
Thank you for your time!
Best,
Foucault
On Wed, Feb 21, 2018 at 5:24 PM, zuxfoucault Wong
wrote:
> Hi Kirstie,
>
> Thank you very much for the suggestions!
> I modified my snippet to prevent it from looping the same value and still
> got the same results?
>
>
Hi Kirstie,
Thank you very much for the suggestions!
I modified my snippet to prevent it from looping the same value and still
got the same results?
##
input=($(cat ./names_68parc.txt))
labels=()
hemis=()
j=0
for i in "${input[@]}"; do
if [[ $i == lh_* ]]; then
hemis[j]="lh"
i=$(echo $i | sed
Hi Foucault,
In the snippet you added you don’t define the labels variable (which you
subsequently loop over in for label in ${labels}).
There are two possible mistakes that are easy to fix. One may be that you
forgot to read in the labels! And the other is that to get all the values in an
arr
Dear Freesurfer experts,
Based on this
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-September/07.html
, I
wrote a short script to extract the centroids from Desikan-Killiany atlas.
##
for hemi in lh rh; do
mri_annotation2label --subject fsaverage --hemi ${hemi} --outdir ./l
