Re: [Freesurfer] Extending the pial surface

2020-09-09 Thread Fischl, Bruce
change the intensity targets in mris_make_surfaces if the control points don’t help, using expert opts Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Monica Bondy Sent: Wednesday, September 9, 2020 10:58 AM To: Freesurfer support list Subject: [Freesurfer] Extending the

Re: [Freesurfer] Extending the pial surface

2020-09-09 Thread Douglas N. Greve
Can you send a pic? On 9/9/2020 10:57 AM, Monica Bondy wrote: External Email - Use Caution Hi Freesurfer Developers, I was hoping to get some advice on fixing pial surface error so we can calculate cortical thickness. In several patients, although the aseg is fine, the red outline f

[Freesurfer] Extending the pial surface

2020-09-09 Thread Monica Bondy
External Email - Use Caution Hi Freesurfer Developers, I was hoping to get some advice on fixing pial surface error so we can calculate cortical thickness. In several patients, although the aseg is fine, the red outline for the pial surface is missing parts of the cortex (not the