Re: [Freesurfer] Exporting surface coordinates to Nifti header space

2013-05-30 Thread Douglas N Greve
Hi Max, does this page give you what you need to know? http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat On 05/30/2013 08:29 AM, schre...@informatik.hu-berlin.de wrote: > Hi Freesurfers! > > I'd like to load my original Nifti T1 image data (subject.nii) and the > wm/gm-surface coordina

[Freesurfer] Exporting surface coordinates to Nifti header space

2013-05-30 Thread schreibm
Hi Freesurfers! I'd like to load my original Nifti T1 image data (subject.nii) and the wm/gm-surface coordinate data (for instance lh.pial) in matlab as vectors in the same coordinate system. If I do it in the naive way, i.e. [x,y,z,1]=[i,j,k,1]*sform' for the Nifti coordinates resp. freesurfer_r