Re: [Freesurfer] Expanding pial outline

2006-07-18 Thread Bruce Fischl
can you send a snapshot of what you mean? Make sure that it's not the skull stripping removing things (look at the brainmask.mgz volume) On Tue, 18 Jul 2006, Jake Freimer wrote: I ran two brains through autorecon2 and the pial line is drawn too close at many parts and cuts off parts of the bra

[Freesurfer] Expanding pial outline

2006-07-18 Thread Jake Freimer
I ran two brains through autorecon2 and the pial line is drawn too close at many parts and cuts off parts of the brain. I looked through the website and only saw instructions for how to remove stuff and make the pial line smaller. I was wondering if there is a command I can run to expand the pial