Re: [Freesurfer] Errors running TRACULA (data attached)

2020-09-28 Thread Yendiki, Anastasia
freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Errors running TRACULA (data attached) External Email - Use Caution Dear FreeSurfer Developers, I'm attempting to run Tracula using our subjects DTI nifti files on Freesurfer version 7.1.1 (Ubuntu 18.04). I could run all steps of "t

[Freesurfer] Errors running TRACULA (data attached)

2020-09-27 Thread ksak666
External Email - Use Caution Dear FreeSurfer Developers, I'm attempting to run Tracula using our subjects DTI nifti files on Freesurfer version 7.1.1 (Ubuntu 18.04). I could run all steps of "trac-all" commands in a single subject using the attached configuration file (dmrirc_MU

Re: [Freesurfer] Errors running TRACULA (data attached) - valid frame numbers

2019-10-06 Thread Yendiki, Anastasia
: [Freesurfer] Errors running TRACULA (data attached) - valid frame numbers External Email - Use Caution Hi Anastasia, Thank you for answering! I think you are right and the problem is there, when checking the number of slices in the dwindling file I get: dimensions: 104 x 104 x 72

Re: [Freesurfer] Errors running TRACULA (data attached) - valid frame numbers

2019-10-06 Thread Mazzetti, C. (Cecilia)
External Email - Use Caution Hi Anastasia, Thank you for answering! I think you are right and the problem is there, when checking the number of slices in the dwindling file I get: dimensions: 104 x 104 x 72 Although the original dwindling data has: 104 x 104 x 72 x 111 vox

[Freesurfer] Errors running TRACULA (data attached) - valid frame numbers

2019-10-06 Thread Mazzetti, C. (Cecilia)
External Email - Use Caution Dear members, I've tried troubleshooting but can't wrap my head around this. Trying to run TRACULA after recon-all the subjects, but I keep getting: [...] R: Subscript out of range. R: Subscript out of range. R: Subscript out o

Re: [Freesurfer] Errors running TRACULA (data attached) - valid frame numbers

2019-10-05 Thread Yendiki, Anastasia
@nmr.mgh.harvard.edu Subject: [Freesurfer] Errors running TRACULA (data attached) - valid frame numbers External Email - Use Caution Dear members, I've tried troubleshooting but can't wrap my head around this. Trying to run TRACULA after recon-all the subjects, but I ke

[Freesurfer] Errors running TRACULA (data attached) - valid frame numbers

2019-10-05 Thread Mazzetti, C. (Cecilia)
External Email - Use Caution Dear members, I've tried troubleshooting but can't wrap my head around this. Trying to run TRACULA after recon-all the subjects, but I keep getting: [...] R: Subscript out of range. R: Subscript out of range. R: Subscript out of