[Freesurfer] Error with Clusters Summary

2011-09-29 Thread Antonella Kis
Hi, Sorry, I am coming up with the same problem. I am running the mri_glmfit_sim on the QDEC results to get the text file with the cortical thickness average and cluster summary but unfortunately I see for one side the --sim is not give me any clusters even if I can see 5 in QDEC after ch

Re: [Freesurfer] Error with Clusters Summary (ASAP)

2011-09-29 Thread Douglas N Greve
The problem is likely that none of your clusters are significant at p<.05 (the default cluster-wise correction). Try changing it with "--cwpvalthresh .99" Antonella Kis wrote: > Dear Doug, > > Sorry, I am coming up with the same problem. I am running the > mri_glmfit_sim on the QDEC results to

[Freesurfer] Error with Clusters Summary (ASAP)

2011-09-29 Thread Antonella Kis
Dear Doug, Sorry, I am coming up with the same problem. I am running the mri_glmfit_sim on the QDEC results to get the text file with the cortical thickness average and cluster summary but unfortunately I see for one side the --sim is not give me any clusters even if I can see 5 in QDEC after c