Re: [Freesurfer] Error in segmentHA_T1.sh

2018-10-26 Thread Iglesias Gonzalez, Eugenio
behalf of "Scheffler, F, Mev [fre...@sun.ac.za]" Reply-To: Freesurfer support list Date: Friday, 26 October 2018 at 17:35 To: Freesurfer support list Subject: Re: [Freesurfer] Error in segmentHA_T1.sh External Email - Use Caution Sorry, scratch that. Apparently it just didn

Re: [Freesurfer] Error in segmentHA_T1.sh

2018-10-26 Thread Scheffler, F, Mev [fre...@sun.ac.za]
21 938 9771 Email | E-pos: fre...@sun.ac.za From: on behalf of "Scheffler, F, Mev [fre...@sun.ac.za]" Reply-To: Freesurfer support list Date: Friday, 26 October 2018 at 18:24 To: Freesurfer support list Subject: [Freesurfer] Error in segmentHA_T1.sh External Email - U

[Freesurfer] Error in segmentHA_T1.sh

2018-10-26 Thread Scheffler, F, Mev [fre...@sun.ac.za]
External Email - Use Caution Dear Freesurfer Developers I’ve run recon-all -all on a batch of 20 subjects on a linux based high performance computing setup and am now trying to run the segmentHA_T1 on them as well. It sets up the environment and then complains about myMRIread a

Re: [Freesurfer] Error in segmentHA_T1

2017-09-25 Thread Iglesias Gonzalez, Eugenio
http://cmictig.cs.ucl.ac.uk/ From: on behalf of Tiril Pedersen Gurholt Reply-To: Freesurfer support list Date: Friday, 22 September 2017 at 20:47 To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] Error in segmentHA_T1 Dear Experts, I recently installed Freesurfer developme

[Freesurfer] Error in segmentHA_T1

2017-09-22 Thread Tiril Pedersen Gurholt
Dear Experts, I recently installed Freesurfer development version (dated Sept. 16, 2017) on a Mac Sierra (10.12.6). When trying to run segmentHA_T1.sh I encounter a java problem: "JavaVM: Failed to load JVM: /Library/Java/JavaVirtualMachines/jdk1.8.0_144.jdk/Contents/Home/bundle/Libraries/lib