Re: [Freesurfer] Error in lh.thickness - rh.thickness not shown in qdec

2008-12-05 Thread Nick Schmansky
Julia, Most likely the processed data for that subject is out of sync (stuff rerun later and out of order). If you run: recon-all -s subjid -make all then it should do nothing if all the data files were created in the right order. I would add -dontrun to that recon-all command so it just print

Re: [Freesurfer] Error in lh.thickness - rh.thickness not shown in qdec

2008-12-05 Thread Bruce Fischl
it means that subject is inconsistent. Try running recon-all -s 4964-14_recon -hemi lh -make all cheers Bruce On Fri, 5 Dec 2008, Julia Altenburg wrote: Hi, when running qdec the following error shows up. It is possible to run the analysis for the lh. thickness and area but not for the sa

[Freesurfer] Error in lh.thickness - rh.thickness not shown in qdec

2008-12-05 Thread Julia Altenburg
Hi, when running qdec the following error shows up. It is possible to run the analysis for the lh. thickness and area but not for the same in rh. In the single subject folders the averages for rh. are missing. qcache did run without any error messages. I thought it could have something to do wit