Re: [Freesurfer] Error during skullstripping: numerical result out of range

2020-11-02 Thread Hye Min Shin
External Email - Use Caution Hello experts, So I did not see brainmask.mgz in mri folder and it looked like reconall stopped at mri_em_register stage because I couldn't find talairach_with_skull.lt in transforms folder. So I tried running mri_em_register again and got the followi

Re: [Freesurfer] Error during skullstripping: numerical result out of range

2020-10-20 Thread Fischl, Bruce
: numerical result out of range External Email - Use Caution Hi experts, While running recon-all on subjects with 3T T1 scans, I ran into an error with one subject during skullstripping stage. Recon-all was running with 3T flag. The error message is the following: register_mri

[Freesurfer] Error during skullstripping: numerical result out of range

2020-10-19 Thread Hye Min Shin
External Email - Use Caution Hi experts, While running recon-all on subjects with 3T T1 scans, I ran into an error with one subject during skullstripping stage. Recon-all was running with 3T flag. The error message is the following: register_mri: find_optimal_transform find_opti