Re: [Freesurfer] Error Talairach registration

2012-08-16 Thread Louis Nicholas Vinke
Hi Venkat, In your second recon-all command, the -notal-check flag should appear after the -autorecon1 flag instead of before. Should look like this: recon-all -autorecon1 -notal-check -subjid nonhyper_44 The talairach check output seems peculiar though (p=0.), so you may want to take a

[Freesurfer] Error Talairach registration

2012-08-15 Thread Rajagopalan, Venkateswaran
Hi All, When I ran recon-all -autorecon1 in one of my subject I encountered the following error ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0., pval=0. < threshold=0.0050) Manual Talairach alignment may be necessary, or include the -notal-check