Re: [Freesurfer] ERROR in long_mris_slope

2013-05-23 Thread Martin Reuter
Hi Cathy, please cc the freesurfer list when replying, so that other people can profit from or contribute to the discussion. (Maybe someone else can comment on the transfer of edits in cross processing between versions 5.0.5.3 ??) So your cross data is processed with a mix of version 5 and

Re: [Freesurfer] ERROR in long_mris_slope

2013-05-22 Thread Martin Reuter
Hi Cathy, I think the problem is when there are tabs AND spaces. Only spaces should also work. I can write some code (when I have time) that checks these things, maybe for the next release. Best, Martin On 05/22/2013 02:21 PM, Catherine Bois wrote: > Hi, > > Thank you for your reply. I finally

Re: [Freesurfer] ERROR in long_mris_slope

2013-05-22 Thread Martin Reuter
Hi Cathy, it must be something else (I think). The mris_calc command looks weird ("--label " looks like the label is not passed, but a space instead, it then thinks 'mul' is a file). qdecfinal is your qdec table? Make sure it contains only spaces to separate the fields. It should have at leas

[Freesurfer] ERROR in long_mris_slope

2013-05-20 Thread Catherine Bois
Dear Freesurfer experts, I am trying to conduct the long_mris_slopes --qdec qdecfinal --meas thickness --hemi lh --do-avg --do-rate --do-pc1 --do-spc --do-stack ?do-label ?time time --qcache fsaverage command for my longitudinal processing. However I keep getting the error message: mris_cal