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Sorry for the late response and thank you. It was related to the
orientation. of those images.
Thank you,
Fernanda
On Mon, May 21, 2018 at 7:34 PM Douglas N. Greve
wrote:
> This usually means that the registration failed. Have you looked at
> the
This usually means that the registration failed. Have you looked at
the image to make sure that there are no obvious problems? Is the voxel
size about 1mm? Is it T1 weighted?
On 05/21/2018 05:31 PM, Fernanda Hansen P. de Moraes wrote:
>
> Dear FreeSurfer experts,
>
> I am having some trouble
External Email - Use Caution
Dear FreeSurfer experts, I am having some trouble to understand this error
that showed up in some subjects that my group is processing. The recon-all
log shows that message: *ERROR: mpr2mni305 failed, see
transforms/talairach_avi.log * All talairach_avi
Hello Dear Sir/Madam,
Please provide your expert suggestions to resolve the above-mentioned error.
Thank you very much,
Best regards
Manoj
On Sat, Nov 18, 2017 at 11:05 AM, Manoj Kumar wrote:
> Hello Dear Sir/Madam,
>
> I am fairly new to the freesurfer and am getting an error "ERROR:
> mpr2m
Hi there
I running freesurfer-Darwin-lion-stable-pub-v5.3.0 on a Mac 10.10.5. I have run
recon-all successfully in the past, but now I am getting an error of mpr2mni305
failed, see transforms/talairach_avi.log
This issue appears the same as a recent post
http://www.mail-archive.com/freesurfer%
Dear FSL experts,
I am running freesurfer-Darwin-lion-stable-pub-v5.3.0 on MAC 10.10.5.
Could you please help me with this error message? I think it relates to the
library, this is what it states in talairach_avi.log.
But I am unsure how to solve this issue.
Any help is greatly appreciated,
Than
mri_convert -iks 1 --conform ga_2010.nii 001.mgz
will create an image where the z direction is 1mm. but the orientation
will still be wrong, since it was missing from the header (or
incorrect). orient_mri can be used to rotate it, but one cannot know
whether left or right is correct.
n.
On Mo
The images are: 0.5 x 0.5 x 1.0
Can mri_convert fix it or should I edit the Nifti header?
2011/5/16 Nick Schmansky
> PPJ,
>
> Hi,
>
> mri_info /space/incoming/ga_2010.nii
>
> shows that the image is 0.5 x 0.5 x 0.5. but when viewing in freeview
> or tkmedit, the brain seems 'squashed', as if
PPJ,
Hi,
mri_info /space/incoming/ga_2010.nii
shows that the image is 0.5 x 0.5 x 0.5. but when viewing in freeview
or tkmedit, the brain seems 'squashed', as if there is a slice gap. do
you know the details of how this was acquired?
N.
On Mon, 2011-05-16 at 17:49 -0300, Pedro Paulo de Ma
I'm having this error in the recon-all
#
#@# Talairach Mon May 16 16:38:01 EDT 2011
/usr/local/freesurfer/subjects/GAGRICOLA/mri
talairach_avi --i orig.mgz --xfm transforms/talairach.auto.xfm
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
What does it say in transforms/talairach_avi.log?
--
On Thu, 14 Oct 2010, Maria Luisa Mandelli wrote:
> Hi!
>
> I get this error running recon_all
>
>
> Applications/freesurfer/bin/talairach_avi --i nu.mgz --xfm
> transforms/talairach.auto.xfm
> ERROR: mpr2mni305 failed, see transforms/talairac
Hi!
I get this error running recon_all
Applications/freesurfer/bin/talairach_avi --i nu.mgz --xfm
transforms/talairach.auto.xfm
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
parameter 1 1.219086 -> -0.50 qaram1.5209
imgrege: no voxels in register
ERROR: 'imgreg_4dfp
/data
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