Hi Bruce,
Thank you for your reply. I am using 5.3.0 version. Do I still only
correct misclassified GM voxels in the brainmask?
For the subjects with brain classified as cerebral cortex in the aseg
file which is outside of the pial surface (but present in the
brainmask) how do I correct this:
Hi Ciara
what version are you running? I think you only need to correct voxels that
cause the white and/or pial surfaces to be incorrect, as we correct the
aseg with them (at least I think we do in v6)
cheers
Bruce
On Wed, 13 Dec 2017, FSL Analysis wrote:
Hi again,
I realize my last quest
Hi again,
I realize my last question about the brainmask did not make sense. I meant
to ask if I have to either manually delete all non-brain voxels around the
eye area which is very time consuming per subject or just delete those
misclassified as GM? ( I check this through the command: tkmedit
su
Hi again,
I realize my last question about the brainmask did not make sense. I meant
to ask if I have to either manually delete all non-brain voxels around the
eye area which is very time consuming per subject or just delete those
misclassified as GM? ( I check this through this command: tkmedit
s
Hi all,
I have processed data using freesurfer and the output for most of my
subjects did not remove all of the eye and dura around it during skull
stripping. When I check the brainmask there is dura (or blood vessel) in
the frontal lobe that is classified as GM.
I am wondering if I have to manua
