Hi,
I corrected my proceeding and separated the echoes using the pipeline:
recon-all -s subj_name -i /.../dicom_images.dcm
recon-all -s subj_name -use-gpu -mprage -all
mri_convert -odt float -f 0 ./... .dcm $SUBJECTS_DIR/subj_name/mri/000.mgz
mri_convert -odt float -f 1 ./... .dcm $SUBJECTS_DI
Hi Joerg
you need to convert the individual echoes to be in conformed space without
scaling the intensities, then run it with something like
mris_make_surfaces -dura echo%d.mgz 4 subj_name lh
otherwise it will just load 001.mgz 4 times and think it is the different
echoes. That is, name the ec
Hello FSexperts,
I used the mgh memprage and the dura correction scheme described in:
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28479.html .
Afterwards I applied
recon-all -autorecon-pial -subjid subj_name
to the subjects in order to include the changes in the subsequent F
