Re: [Freesurfer] DICOM input format and structure

2014-03-06 Thread Mattevada, Sravan
: [Freesurfer] DICOM input format and structure Hi Sravan , please post to the list and not to us personally. Thanks! This is just a list of what you (or whoever you are working with acquired), so I don't know what is in there. Probably #2 is what you want, less sure about #4 doug On 03/06/2014 03:

Re: [Freesurfer] DICOM input format and structure

2014-03-06 Thread Douglas N Greve
008/IM11 > > > Thu Mar 6 14:22:43 CST 2014 > dcmunpack done > > > -Sravan > > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr

Re: [Freesurfer] DICOM input format and structure

2014-03-06 Thread Douglas N Greve
They do not have to have a dcm extension. The 180 files represent many slices from a single volume (or multiple volumes). You need to find out which ones are which. One way to do this is to run dcmunpack -src path-to-dicom folder this will look through all the folders and files under path-to-d

[Freesurfer] DICOM input format and structure

2014-03-06 Thread Mattevada, Sravan
Hello, I am new to freesurfer. I went through the Wiki and FAQ's but couldn't find information on the format of the input for recon-all. I understand that one of the input files must have a ".dcm" extension. I have a CD which has MRI scanned images.