Re: [Freesurfer] Cutting an occipital patch

can you send the terminal output from selxavg3-sess? On 10/31/2022 4:38 AM, Noam Khayat wrote: External Email - Use Caution Hi again Douglas, Do you know the answer to my last mail? Do I need to compress all functional nii files to one single file? Thanks! Noam ‫בתאריך יום ב׳, 24 באו

Re: [Freesurfer] Cutting an occipital patch

External Email - Use Caution Hi again Douglas, Do you know the answer to my last mail? Do I need to compress all functional nii files to one single file? Thanks! Noam ‫בתאריך יום ב׳, 24 באוק׳ 2022 ב-19:35 מאת ‪Noam Khayat‬‏ <‪ noamkha...@gmail.com‬‏>:‬ > So if I have 165 nii fil

Re: [Freesurfer] Cutting an occipital patch

External Email - Use Caution So if I have 165 nii files in each run - should I name them f1.nii, f2.nii etc? I tried compressing them into a single f.nii.gz file and it gave me the error I mentioned - "could not determine format for...". Thanks, Noam בתאריך יום ב׳, 24 באוק׳ 2022

Re: [Freesurfer] Cutting an occipital patch

they should be /home/developer/Desktop/Project/sess1/bold/001/f.nii.gz I think nii should work as well On 10/22/2022 6:37 AM, Noam Khayat wrote: External Email - Use Caution Hi again Douglas, I'm trying to do the preprocessing of the functional data for the retinotopy runs. I copied

Re: [Freesurfer] Cutting an occipital patch

External Email - Use Caution Hi again Douglas, I'm trying to do the preprocessing of the functional data for the retinotopy runs. I copied the files from matlab (I used SPM for some of my analysis). When I try to run preproc-sess or selxavg3-sess I keep getting an error: "ERROR: c

Re: [Freesurfer] Cutting an occipital patch

External Email - Use Caution It works, thank you! Noam ‫בתאריך יום ב׳, 17 באוק׳ 2022 ב-0:20 מאת ‪Douglas N. Greve‬‏ <‪ dgr...@mgh.harvard.edu‬‏>:‬ > Try this: > Click on the "brain with scissors icon" ("Cut"), select the points, then > hit "Cut Closed Line". > Now, make sure th

Re: [Freesurfer] Cutting an occipital patch

Try this: Click on the "brain with scissors icon" ("Cut"), select the points, then hit "Cut Closed Line". Now,  make sure the cursor is in the patch you want to keep, then hit "Fill Uncut Area" On 10/14/2022 3:14 AM, Noam Khayat wrote: External Email - Use Caution Hello, I need to

[Freesurfer] Cutting an occipital patch

External Email - Use Caution Hello, I need to cut the occipital pole in order to make a retinotopy analysis. I read that tksurfer no more exists, and with freeview I only succeed in cutting the plane but I'm having trouble with separating it into a patch with the occipital part onl