it's a flag to recon-all. Run recon-all -help and you should find it
On Fri,
11 Jul 2014, Brianna Damadian wrote:
I have not tried that yet - when would I enter this flag? During the initial
recon-all coding or later? Thanks,
Brianna
On Fri, Jul 11, 2014 at 10:49 AM, Bruce Fischl
wrote:
I have not tried that yet - when would I enter this flag? During the
initial recon-all coding or later?
Thanks,
Brianna
On Fri, Jul 11, 2014 at 10:49 AM, Bruce Fischl
wrote:
> Hi Brianna
> if you upload a subject that is not doing well I'll take a look. Have you
> tried the -bigventricles flag?
Hi Brianna
if you upload a subject that is not doing well I'll take a look. Have you
tried the -bigventricles flag?
cheers
Bruce
On Fri, 11
Jul 2014, Brianna Damadian wrote:
Hi Bruce, I'm using v5.3.0. Does this version do well with patients with large
ventricles?
Two cases I ran seemed to
Hi Bruce,
I'm using v5.3.0. Does this version do well with patients with large
ventricles?
Two cases I ran seemed to do well with the ventricles, but some others seem
to be running into some errors (which I haven't had the time to work out
yet).
So in your opinion, to get our desired measures of to
Hi Brianna
yes, that would work (although you would use freeview or tkmedit).
Why do you feel you need a new atlas? Our latest version does quite well,
even on subjects with very very large ventricles. What version are you
running?
cheers
Bruce
On Fri,
11 Jul 2014, Brianna Damadian wrote:
Hi Bruce,
Would be interested in an atlas for aseg that gives total gray matter and
ventricle volume.
Would I be able to create an atlas based on these 30 patients with labeled
volumes for just these measures?
Additionally, my understanding of creating an atlas is very rudimentary -
would I begin t
Hi Brianna
what kind of atlas do you mean? If one for creating the aseg you will need
to have labeled volumes for creating a new atlas
cheers
Bruce
On Fri, 11 Jul 2014, Brianna Damadian wrote:
> Hello,
>
> I am interested in creating my own atlas for elderly patients with enlarged
> ventricl
Hello,
I am interested in creating my own atlas for elderly patients with enlarged
ventricles. We have about 30 patients with axial MPR scans. Is this enough to
build an atlas?
Thanks,
Brianna
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