Re: [Freesurfer] Creating a label from an .mgh file

2012-06-08 Thread Douglas N Greve
locations aren't correct (they don't > correspond to where clusters exist on the original volume). > > Any help would be appreciated. >> Message: 13 >> Date: Wed, 06 Jun 2012 18:04:56 -0400 >> From: Douglas Greve >> Subject: Re: [Freesurfer] Creating a lab

Re: [Freesurfer] Creating a label from an .mgh file

2012-06-08 Thread Ilia
esults in yellow specks showing up on the brain surface, but the spatial locations aren't correct (they don't correspond to where clusters exist on the original volume). Any help would be appreciated. > Message: 13 > Date: Wed, 06 Jun 2012 18:04:56 -0400 > From: Douglas Greve &g

Re: [Freesurfer] Creating a label from an .mgh file

2012-06-06 Thread Douglas Greve
you can use mri_cor2label, eg, for cluster #2, something like mri_cor2label --id 2 --i cluster.mgh --o cluster2.label doug On 6/6/12 4:22 PM, Ilia wrote: > Hello, > > How would one create a label (to be used as an input for > "mris_anatomical_stats") based on a a statistical map generated by qde

[Freesurfer] Creating a label from an .mgh file

2012-06-06 Thread Ilia
Hello, How would one create a label (to be used as an input for "mris_anatomical_stats") based on a a statistical map generated by qdec (for example, the result of a Monte Carlo simulation such as "mc-z.abs.th23.sig.cluster.mgh"). The goal is to obtain average cortical thickness for regions where