Re: [Freesurfer] Cortical thickness map for a pediatric case {Disarmed}

2017-08-24 Thread Sneha Pandya
t: Re: [Freesurfer] Cortical thickness map for a pediatric case {Disarmed} Hi Martin, Sorry for delayed response and thank you so much for looking into it. I will follow the steps as described to get their thickness maps. For qdec, can we do analysis for single subjects? I believe I had tried it earlie

Re: [Freesurfer] Cortical thickness map for a pediatric case {Disarmed}

2017-08-17 Thread Sneha Pandya
behalf of Martin Reuter Sent: Thursday, August 10, 2017 4:40:05 PM To: Freesurfer support list Subject: Re: [Freesurfer] Cortical thickness map for a pediatric case Hi Sneha, I don’t know why this fails. There could be many reasons. Firstmost, the longitudinal stream assumes that head size is

Re: [Freesurfer] Cortical thickness map for a pediatric case

2017-08-10 Thread Martin Reuter
list > Subject: Re: [Freesurfer] Cortical thickness map for a pediatric case > > Thank you Bruce, sure thing :) > > Regards, > Sneha > > From: freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Bruce Fischl > > Sent: Monday, August 7, 2017 6:21:57 PM > T

Re: [Freesurfer] Cortical thickness map for a pediatric case

2017-08-10 Thread Sneha Pandya
urfer] Cortical thickness map for a pediatric case Thank you Bruce, sure thing :) Regards, Sneha From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl Sent: Monday, August 7, 2017 6:21:57 PM To: Freesurfer support list Subject: Re: [Frees

Re: [Freesurfer] Cortical thickness map for a pediatric case

2017-08-08 Thread Sneha Pandya
Thank you Bruce, sure thing :) Regards, Sneha From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl Sent: Monday, August 7, 2017 6:21:57 PM To: Freesurfer support list Subject: Re: [Freesurfer] Cortical thickness map for a pediatric case

Re: [Freesurfer] Cortical thickness map for a pediatric case

2017-08-07 Thread Bruce Fischl
PM To: Freesurfer support list Subject: Re: [Freesurfer] Cortical thickness map for a pediatric case   Hi Sneha can you include the output as text instead of an image? thanks Bruce On Mon, 7 Aug 2017, Sneha Pandya wrote: > > Hi Bruce, > > > Please find attached recon-all.log file

Re: [Freesurfer] Cortical thickness map for a pediatric case

2017-08-07 Thread Sneha Pandya
: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl Sent: Monday, August 7, 2017 2:02:27 PM To: Freesurfer support list Subject: Re: [Freesurfer] Cortical thickness map for a pediatric case Hi Sneha can you include the output as text instead of an image? thanks Bruce On Mon, 7

Re: [Freesurfer] Cortical thickness map for a pediatric case

2017-08-07 Thread Bruce Fischl
...@nmr.mgh.harvard.edu on behalf of Bruce Fischl Sent: Monday, August 7, 2017 1:43:01 PM To: Freesurfer support list Subject: Re: [Freesurfer] Cortical thickness map for a pediatric case   Hi Sneha can you send us the commad you ran and the full screen output inluding the error and also the recon-all.log

Re: [Freesurfer] Cortical thickness map for a pediatric case

2017-08-07 Thread Bruce Fischl
Hi Sneha can you send us the commad you ran and the full screen output inluding the error and also the recon-all.log? cheers Bruce On Mon, 7 Aug 2017, Sneha Pandya wrote: > > Dear team, > > > I have completed cross-sectional pipeline on my pediatric case with a > baseline and 4 follow up

[Freesurfer] Cortical thickness map for a pediatric case

2017-08-07 Thread Sneha Pandya
Dear team, I have completed cross-sectional pipeline on my pediatric case with a baseline and 4 follow up time points between 4-7 years of age. However, I was not able to run longitudinal pipeline on it as the base template creation failed with some topological errors. I assume this failure is