Re: [Freesurfer] Cortical thickness average

2016-03-25 Thread Douglas N Greve
mri_concat subject1/lh.thickness.fsaverage.mgh subect2/lh ... --mean --o lh.thickness.fsaverage.mean.mgh On 03/24/2016 07:24 PM, Sahil Bajaj wrote: > Hello FreeSurfer community, > > I calculated cortical thickness for 100 controls following the > instructions described here: > https://surfer.n

Re: [Freesurfer] Cortical thickness average

2016-03-24 Thread Sahil Bajaj
Thanks a lot Elijah, I will give a try to this and will surely get back to you if I had any issue. Thanks again for the help. Regards, Sahil On Thu, Mar 24, 2016 at 6:39 PM, Elijah Mak wrote: > Hi Sahil, > > I did something similar recently. I believe you can use mri_concat with > the -mean op

Re: [Freesurfer] Cortical thickness average

2016-03-24 Thread Elijah Mak
Hi Sahil, I did something similar recently. I believe you can use mri_concat with the -mean option to create an average map of the group. Another option might be make_average_subject? https://surfer.nmr.mgh.harvard.edu/fswiki/make_average_subject Best Wishes, Elijah

[Freesurfer] Cortical thickness average

2016-03-24 Thread Sahil Bajaj
Hello FreeSurfer community, I calculated cortical thickness for 100 controls following the instructions described here: https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness So I have 100 lh.thickness.fsaverage.mgh, one for each subject. I was wondering if there is any way to avera