du>
on behalf of Wang, Lily <mailto:lwan...@partners.org>
Sent: Thursday, August 29, 2019 11:17 AM
To: Freesurfer support list
<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Corresponding structures to an ROI
Sorry, I meant the masks were made using F
Lily
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Wang, Lily
Sent: Thursday, August 29, 2019 11:17 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Corresponding structures to an ROI
Sorry, I meant the masks were made using FLAIR. Does bbregister work on
registeri
t;
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Greve, Douglas
> N.,Ph.D.
> *Sent:* Thursday, August 29, 2019 10:55 AM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] Corresponding structures to an ROI
>
> Use bbregister instead of mri_robus
urfer] Corresponding structures to an ROI
Use bbregister instead of mri_robust_register
You can then use mri_label2vol with the --seg option to map into either
direction.
Once they are in register, I would isolate each of your ROIs by creating
a binary volume for each with mri_binarize --i yourrois.mgz --match
Use bbregister instead of mri_robust_register
You can then use mri_label2vol with the --seg option to map into either
direction.
Once they are in register, I would isolate each of your ROIs by creating
a binary volume for each with mri_binarize --i yourrois.mgz --match
SegId --o segid.mgz where
Hi All,
I have several white matter ROI masks unique to each subject that were made
using the subjects' T2 scans and I would like to use wmparc to find out what
brain structures those ROI's correspond to. I'm guessing that I will need to
either register T1 to T2 or T2 to T1 at one point, which
