Re: [Freesurfer] Corrections with white matter

2011-07-14 Thread Antonella Kis
Good morning Bruce, Looking back to the Slice No.82 I am attaching now the brainmask for this slide. While switching between brainmask and wm.mgz my opinion is that  I shouldn't  add any vertex on the wm.mgz on the right hemisphere.  Is this correct? I am not sure about the bottom part. It loo

Re: [Freesurfer] Corrections with white matter

2011-07-13 Thread Bruce Fischl
yes, the brainmask would be fine. The wm.mgz is to diagnose what went wrong, but the brainmask tells you whether it is right or not On Wed, 13 Jul 2011, Antonella Kis wrote:  Hi Bruce, Thanks again for helping so much. But how about the example in the tutorial * FsTutorial/WhiteMatterEdits

Re: [Freesurfer] Corrections with white matter

2011-07-13 Thread Antonella Kis
Hi Bruce, Thanks again for helping so much. But how about the example in the tutorial * FsTutorial/WhiteMatterEdits.I was following the example in how to fill the cutting into for yellow line. There is mentioned only to open the brainmask and wm.mgz and switching/checking between t

Re: [Freesurfer] Corrections with white matter

2011-07-13 Thread Bruce Fischl
Hi Antonella, what format are the attachments in? They don't have an extension Bruce On Wed, 13 Jul 2011, Antonella Kis wrote:  Hi Bruce, Sorry to bother you again. I am doing my corrections for the white matter and I have few slides where I am not sure what should I do. On the slice no. 8