Re: [Freesurfer] Coregistrtion Siemens DICOM data

2008-09-05 Thread Doug Greve
I've attached the rules that freesurfer uses to extract the geometry info from siemens dicom files. For EPIs, you have to read the shadow field (stored as plain text). Look at these slides for how to automatically create registrations from the header: https://surfer.nmr.mgh.harvard.edu/fswiki

[Freesurfer] Coregistrtion Siemens DICOM data

2008-09-05 Thread Alexander Gussew
Dear Sir or Madam, In our institution we try to implement an automatic routine for the co-registration of MRI images and 3 dimensional MR spectroscopic metabolic maps acquired on SIEMENS MR Scanner. We try to realize it by using the Dicom reading function as implemented in MATLAB. To evaluate the