The nifti qform should be that of the scanner.
doug
octavian lie wrote:
> Dear All,
>
> I am using a pipeline for electrode coregistration including
> freesurfer for pial surface generation, run by default recon-all -all
> and mris_volmask with --save_distance option. The FS files
> ?h.dpial.
Hi Octavian
the coordinate systems used by FreeSurfer are documented here:
https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems?highlight=%28systems%29%7C%28coordinate%29
I believe that the ?h.dpial.ribbon.mgz is one our "conformed" coordinate
system, but Doug would know best.
cheers
Dear All,
I am using a pipeline for electrode coregistration including freesurfer for
pial surface generation, run by default recon-all -all and mris_volmask
with --save_distance option. The FS files ?h.dpial.ribbon.mgz are the sole
FS output. They are converted in the pipeline to nii.gz files usi
