Re: [Freesurfer] Converting mgz to nii.gz

2012-01-17 Thread Lilla Zollei
___ From: Lilla Zollei To: Antonella Kis Cc: "freesurfer@nmr.mgh.harvard.edu" Sent: Monday, January 16, 2012 5:39 PM Subject: Re: [Freesurfer] Converting mgz to nii.gz Hi Antonella, You shou

Re: [Freesurfer] Converting mgz to nii.gz

2012-01-16 Thread Lilla Zollei
Hi Antonella, You should be able to just do mri_convert /media/2Tra/Antonella_2011/DTI_FS/dtrecon_cvs/C01_cvs/C01_dti/fa-masked.ANAT+CVS-to-avg35.mgz /media/2Tra/Antonella_2011/DTI_FS/dtrecon_cvs/C01_cvs/C01_dti/fa-masked.ANAT+CVS-to-avg35.nii.gz BTW, when resampling your FA data to CVS spac

[Freesurfer] Converting mgz to nii.gz

2012-01-16 Thread Antonella Kis
Dear all, I am trying to convert my DTI image which was previous resampled to CVS space from an .mgz format to a .nii.gz format. When I resampled to CVS space I used the nearest interpolation. I used for converting this .mgz image to .nii.gz the mri_convert as you can see below: mri_convert -