Re: [Freesurfer] Convert procedure

2005-03-08 Thread Bruce Fischl
tion? Best Luca Roccatagliata - Original Message - From: "Bruce Fischl" <[EMAIL PROTECTED]> To: "Luca Roccatagliata" <[EMAIL PROTECTED]> Cc: Sent: Monday, March 07, 2005 11:39 AM Subject: Re: [Freesurfer] Convert procedure if you are reading an analyze file,

Re: [Freesurfer] Convert procedure

2005-03-08 Thread Luca Roccatagliata
l" <[EMAIL PROTECTED]> To: "Luca Roccatagliata" <[EMAIL PROTECTED]> Cc: Sent: Monday, March 07, 2005 11:39 AM Subject: Re: [Freesurfer] Convert procedure > if you are reading an analyze file, specify the .img part of it, not the > .hdr. In general though, you're

Re: [Freesurfer] Convert procedure

2005-03-07 Thread Bruce Fischl
if you are reading an analyze file, specify the .img part of it, not the .hdr. In general though, you're better off using dicom. You can convert to COR via: mri_convert slice.dcm $SUBJECTS_DIR/$subject/mri/orig where slice.dcm is one slice in the series you want to convert. cheers, Bruce On Mon,

[Freesurfer] Convert procedure

2005-03-07 Thread Luca Roccatagliata
Hi,   I have problems with the convert/average procedure. I acquired 124 sagittal slices with a SPGR sequence. Is the conversion from sagittal plane to coronal plane included in this step? I tried to load .dcm and. img files. First of all, are they both compatible with mri_convert? I tr