mri_label2vol will take segmentations as an input look at the --help
doug
On 02/15/2013 04:25 PM, Roderick McColl wrote:
> Sorry for the bother, but there isn't a label for L or R WM.
> Should I use mri_vol2vol on the aseg.mgz file and the mni152.register.dat
> file instead i.e. just register as
you can use mni152reg to compute the registration to the MNI152 space.
Make sure to spec the 1mm target. You can then use mri_label2vol to map
aseg.mgz to the MNI152 space.
doug
On 02/13/2013 03:40 PM, Roderick McColl wrote:
> Hello all,
> I have a need to generate LH and RH WM masks for analy
Hello all,
I have a need to generate LH and RH WM masks for analysis.
I can convert aseg.mgz to aseg.nii but the dims are 256x256x256
and I need to use the FSL MNI format which is 182x218x182.
Is there a recipe for cropping / translating etc to match the aseg.mgz
atlas with the FSL atlases?
Tha
